PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON56006.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

GRF

Protein Properties

Length: 425aa MW: 45691.6 Da PI: 8.1043

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON56006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.8	6.1e-26	165	209	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgrsrsrk++e+ PON56006.1 165 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHMHRGRSRSRKPVEN 209 79****************************************997 PP
2	QLQ	52.3	1.7e-18	89	125	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+++y++a++ vPpeLlq+i+k PON56006.1 89 SYFSLAQWQELELQALIFRYMLAGAAVPPELLQPIKK 125 79*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MDFHLKQWRN QQYESEHHQQ QHSAKIPKLV SETHHKKPDP SSYGSEPLPL FVPEPNTKMI 60 TSSGTLSAFP PDSTTPTAST TRIIPRMGSY FSLAQWQELE LQALIFRYML AGAAVPPELL 120 QPIKKSITLH TTPYFLHHSL QPYPHYQPSP AALFQSGYWG RAAMDPEPGR CRRTDGKKWR 180 CSRDVVVGQK YCERHMHRGR SRSRKPVENP TPAGGRLAGS GAGGGGGALA SNTTHPIATA 240 PPPLSTSSGG THFSLSGPSS SSIDLLHLNQ SSSDVKSENK DLFETHNGVS GDGKSDGHIL 300 RHFFDDWPRS LQEPDNGGGS NNTNNRNPVN SATSLSISIP GNSSSDVSLK LSTGDGEEPG 360 QPPEAHSDHG QPQLGWAAGW ASNPMASMGG PLAEALRSSN SNSSPTSVLH QLPRGSAADA 420 CIVSS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MDFHLKQWRN QQYESEHHQQ QHSAKIPKLV SETHHKKPDP SSYGSEPLPL FVPEPNTKMI  60
TSSGTLSAFP PDSTTPTAST TRIIPRMGSY FSLAQWQELE LQALIFRYML AGAAVPPELL  120
QPIKKSITLH TTPYFLHHSL QPYPHYQPSP AALFQSGYWG RAAMDPEPGR CRRTDGKKWR  180
CSRDVVVGQK YCERHMHRGR SRSRKPVENP TPAGGRLAGS GAGGGGGALA SNTTHPIATA  240
PPPLSTSSGG THFSLSGPSS SSIDLLHLNQ SSSDVKSENK DLFETHNGVS GDGKSDGHIL  300
RHFFDDWPRS LQEPDNGGGS NNTNNRNPVN SATSLSISIP GNSSSDVSLK LSTGDGEEPG  360
QPPEAHSDHG QPQLGWAAGW ASNPMASMGG PLAEALRSSN SNSSPTSVLH QLPRGSAADA  420
CIVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-63	GRF family protein