PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON56125.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26561.9 Da PI: 7.0438

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON56125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	70	122	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k PON56125.1 70 KKRLTADQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 122 5679************************************************9 PP
2	HD-ZIP_I/II	117.3	8.5e-38	69	159	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d +++e+++L++ev +L+ l+ PON56125.1 69 KKKRLTADQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEFDVMSKEKQKLQEEVMKLKGMLR 159 9*************************************************************************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MDWNSNLRHY VSRPECSYGF LYNYSYDQYQ GMEIKHQGLM SEGAQGQMVA SMEKDQSGIS 60 YGCGQLVDKK KRLTADQLES LERSFQEEIK LDPDRKMKLS RDLGLQPRQI AVWFQNRRAR 120 WKAKQLERLY DALKQEFDVM SKEKQKLQEE VMKLKGMLRD QGAWKQVSTG GYTDISGEET 180 VESTSGAIPS SSKSLGANQH HQNMAECSHI LNVEEYNPVS PPYWGSLPSY P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	98	KKKRLTADQLESLERSFQEEIKLDPDRKMK
2	117	125	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-55	HD-ZIP family protein