PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON56542.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

NF-YC

Protein Properties

Length: 262aa MW: 29372.2 Da PI: 6.5835

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON56542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.9e-56	80	183	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv PON56542.1 80 QLQNFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 178 89****99999********************************************************************************** PP NF-YC 97 prdel 101 pr++l PON56542.1 179 PREDL 183 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MDHQGHNQPQ SMMMVGGGAQ MPYGTSPYQS NQMGGNPTSV SVASVGAIQP TSQPAGAQLA 60 QHQLAYQHIH QQQQQQLQQQ LQNFWANQYQ EIEKVTDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVIFA RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180 EDLKDEVVAS LPRGTVPVGG AADALPYCYM PPQHAPQVGT PGMIMGKPVM DPAMYAQQSH 240 HPYMGQQMWQ PQHEQQQSSS DR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	2e-85	NF-YC family protein