PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON56644.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HB-PHD

Protein Properties

Length: 704aa MW: 79784.5 Da PI: 9.6525

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON56644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.9	2.6e-11	484	525	12	53
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e+L e+F++n ps++ +e L+k+lgL+ ++V+ WF+N R+ PON56644.1 484 VERLREVFAENELPSRDVKENLSKELGLDSEKVSKWFKNARY 525 789*************************************97 PP
2	PHD	39.6	1.2e-13	239	293	1	50
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + +++++lCd +C+++fH+ Cl+++l++e++p g w+C+ C++ PON56644.1 239 FCAKCKLreAFPDNDIILCDgTCNSAFHQRCLDPPLDTESIPPGdqGWFCRFCEC 293 699999854455******56****************9999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MRGTGKKLCS QESGKSCYSN TETEPKLIVP LKSKKGSKVS HGKNQKLKLK SHIKKSGSTL 60 TKKKDTDSLN RGTENNTTLR KLIGKKLLHK KKLGTKSSSQ LSSLKLQGEK VRPSGEKIEV 120 NANGDVNIEK VKTRRRRKRK KVNVEPDEPS RLQRRTRYLL IKIKLEQNLI DAYSGEGWKG 180 QSREKIKPEK ELQRAKKQIL KCKLGIRDAI RQLDSLSSVG SIEDSVMAPD GSVYHEHIFC 240 AKCKLREAFP DNDIILCDGT CNSAFHQRCL DPPLDTESIP PGDQGWFCRF CECRMEILEV 300 VNAHIGTHFS MNNSWEDVFE EEAALPEDGN ASLHPDDEWP SDDSEDDDYN PERRENSCSI 360 GGAGTDDNES EDEFSFNSSV GSDESTDAEI VYGRRQRREV DYRKLYDEMF GKDAPPYEQI 420 SEDEDWGPAK RKRREKESDA ASTLMTLHES EKVSSDVDVQ EVKRKLPPDT QIRRSFFRIP 480 RVAVERLREV FAENELPSRD VKENLSKELG LDSEKVSKWF KNARYLALKT RKAESAKQLD 540 TATPGISKDS RFENVMKEGA DLIMSDNTST ETVVHVIKNP KKPCQRKRPK SLSSPLKVKH 600 RKKSSLMSPA KSKKESLELS DDVTLKKLLK ERTKEKKRVN ILSGVGCADA EAEMGRLCKI 660 KGRLESIKQK LLKYQNNKAN NSDKLTLNGP SVIYVPVAEL REKA

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MRGTGKKLCS QESGKSCYSN TETEPKLIVP LKSKKGSKVS HGKNQKLKLK SHIKKSGSTL  60
TKKKDTDSLN RGTENNTTLR KLIGKKLLHK KKLGTKSSSQ LSSLKLQGEK VRPSGEKIEV  120
NANGDVNIEK VKTRRRRKRK KVNVEPDEPS RLQRRTRYLL IKIKLEQNLI DAYSGEGWKG  180
QSREKIKPEK ELQRAKKQIL KCKLGIRDAI RQLDSLSSVG SIEDSVMAPD GSVYHEHIFC  240
AKCKLREAFP DNDIILCDGT CNSAFHQRCL DPPLDTESIP PGDQGWFCRF CECRMEILEV  300
VNAHIGTHFS MNNSWEDVFE EEAALPEDGN ASLHPDDEWP SDDSEDDDYN PERRENSCSI  360
GGAGTDDNES EDEFSFNSSV GSDESTDAEI VYGRRQRREV DYRKLYDEMF GKDAPPYEQI  420
SEDEDWGPAK RKRREKESDA ASTLMTLHES EKVSSDVDVQ EVKRKLPPDT QIRRSFFRIP  480
RVAVERLREV FAENELPSRD VKENLSKELG LDSEKVSKWF KNARYLALKT RKAESAKQLD  540
TATPGISKDS RFENVMKEGA DLIMSDNTST ETVVHVIKNP KKPCQRKRPK SLSSPLKVKH  600
RKKSSLMSPA KSKKESLELS DDVTLKKLLK ERTKEKKRVN ILSGVGCADA EAEMGRLCKI  660
KGRLESIKQK LLKYQNNKAN NSDKLTLNGP SVIYVPVAEL REKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	92	RKLIGKKLLHKKK
2	130	141	KVKTRRRRKRKK
3	134	140	RRRRKRK
4	134	164	RRRRKRKKVNVEPDEPSRLQRRTRYLLIKIK
5	135	142	RRRKRKKV
6	135	141	RRRRKRK
7	135	165	RRRRKRKKVNVEPDEPSRLQRRTRYLLIKIK
8	136	166	RRRRKRKKVNVEPDEPSRLQRRTRYLLIKIK
9	137	141	RKRKK
10	137	167	RRRRKRKKVNVEPDEPSRLQRRTRYLLIKIK
11	138	168	RRRRKRKKVNVEPDEPSRLQRRTRYLLIKIK
12	431	436	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-161	HB-PHD family protein