PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON57041.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 28938.7 Da    PI: 6.5312
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON57041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.8e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien   rqvtf+kRrng++KKA+ELSvLCdaev viifsstg+ly++ss
  PON57041.1  9 KKIENLNSRQVTFCKRRNGLFKKAQELSVLCDAEVGVIIFSSTGRLYDFSS 59
                68***********************************************96 PP
2K-box59.71.2e-209817919100
       K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++ + + +e+++L+ +  +++G++L+ Ls+k+Lq++e++L ++l +i++kK++llleq++++  +e+++  en++Lrk++ee
  PON57041.1  98 HDENDIMDETQMLRLTCMRMMGKELDGLSFKDLQHMEDKLTEGLLSIKDKKEQLLLEQVKKSTLREQKAMTENENLRKEIEE 179
                 44567899******999**************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRGKIEIKK IENLNSRQVT FCKRRNGLFK KAQELSVLCD AEVGVIIFSS TGRLYDFSST  60
RMEDILSRYN RGPGCLSNNL EPSPDLDATN SEKSPPEHDE NDIMDETQML RLTCMRMMGK  120
ELDGLSFKDL QHMEDKLTEG LLSIKDKKEQ LLLEQVKKST LREQKAMTEN ENLRKEIEEV  180
RRNYITPILS SHPLERRVTT KSTKANTDQA NSVSEESEHS DASLQLRLSS CFGPKRKAAR  240
IESASYDSAS QVASE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.18e-57MIKC_MADS family protein