PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON57159.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 496aa MW: 53274 Da PI: 8.579

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON57159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.9e-12	53	79	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ PON57159.1 53 PGVPNCVYYMRTGYCGYGSRCRYNHPR 79 5789*********************96 PP
2	zf-CCCH	40	6.6e-13	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ PON57159.1 100 EPVCQYYLKTGTCKFGASCKFHHPK 124 789********************96 PP
3	zf-CCCH	38.7	1.6e-12	144	170	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG+Ck+G +CkF+H++ PON57159.1 144 PGEAECSYYLKTGQCKFGVTCKFHHPQ 170 5789*********************97 PP
4	zf-CCCH	33.7	6.3e-11	326	352	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++++tG Ck+G++C+++H++ PON57159.1 326 PGEPDCLYYLKTGDCKFGSSCRYHHPR 352 5789*********************96 PP
5	zf-CCCH	35.5	1.6e-11	373	398	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G++CkF H++ PON57159.1 373 GVQPCTFYLQNGHCKFGASCKFDHPM 398 5689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MELYGRSPAR NGSNPGHQQE WSPDGGETGL EESMWQLGLT SGGGGGESYP ERPGVPNCVY 60 YMRTGYCGYG SRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF 120 HHPKHGGGSL SQAPLNFYGY PLRPGEAECS YYLKTGQCKF GVTCKFHHPQ PAGTSVTASA 180 PQFYPPVQSP SVPMPDQFVG PSTSMRVARP PLLPGSYVQG AYGPVLFPPG IVPMPGWTPY 240 SIFRVDDTIT VSIAIPERYM RFSPDTAPVS PVLSPGTQPT VGAASMYGVT HLPSSTAALV 300 RPYSSLPSSI GASSSSPKEQ AFPERPGEPD CLYYLKTGDC KFGSSCRYHH PRDRVVPRTN 360 CLLSPMGFPL RQGVQPCTFY LQNGHCKFGA SCKFDHPMGT MRYSPSASSL IDMPVTPYPV 420 GSLLATLAPS STSSDLHPEY SSRMPSSGNT STSSVGLIFS QTVPVSLSDV QLSTQSSVPL 480 SSSRSTRQGG EVRRSS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MELYGRSPAR NGSNPGHQQE WSPDGGETGL EESMWQLGLT SGGGGGESYP ERPGVPNCVY  60
YMRTGYCGYG SRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF  120
HHPKHGGGSL SQAPLNFYGY PLRPGEAECS YYLKTGQCKF GVTCKFHHPQ PAGTSVTASA  180
PQFYPPVQSP SVPMPDQFVG PSTSMRVARP PLLPGSYVQG AYGPVLFPPG IVPMPGWTPY  240
SIFRVDDTIT VSIAIPERYM RFSPDTAPVS PVLSPGTQPT VGAASMYGVT HLPSSTAALV  300
RPYSSLPSSI GASSSSPKEQ AFPERPGEPD CLYYLKTGDC KFGSSCRYHH PRDRVVPRTN  360
CLLSPMGFPL RQGVQPCTFY LQNGHCKFGA SCKFDHPMGT MRYSPSASSL IDMPVTPYPV  420
GSLLATLAPS STSSDLHPEY SSRMPSSGNT STSSVGLIFS QTVPVSLSDV QLSTQSSVPL  480
SSSRSTRQGG EVRRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein