PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON57822.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 164aa MW: 18842.3 Da PI: 7.4733

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON57822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.9	3.9e-39	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vh+++Gasnv k+l+++p + r +a++s+ +eA++r++dPvyG+v++i++l++q++++++ela++++ PON57822.1 5 RCAACKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIYGASNVGKMLQQVPGQLRAQAADSMHFEAQCRMEDPVYGCVKIINELHRQIHNAETELAKTRA 103 6***********************************************************************************************998 PP DUF260 100 el 101 ++ PON57822.1 104 QI 105 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MISGRCAACK YLRRRCPSDC IFSPYFPSNN PQRFACVHRI YGASNVGKML QQVPGQLRAQ 60 AADSMHFEAQ CRMEDPVYGC VKIINELHRQ IHNAETELAK TRAQIAFMIS STNITQQTHH 120 DQLHDDVKFN FNLDNYFLQE QSTNIIDQSS HCPSTQPAPW FVYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-54	LBD family protein