PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON58265.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 531aa    MW: 59444.5 Da    PI: 4.55
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON58265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.75.7e-1081485241374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevsPilkf 93 
                 lv+ Ll+cAeav  +d++la+++L+++   +sp gd++qR+  +f+ +L++rl+   +++    +  + + +        +e++ a++l+++++P++ f
  PON58265.1 148 LVHMLLACAEAVGCRDTQLADSILSQIWASVSPFGDSLQRVSYCFATGLKSRLSVLHNNVNTNGTFMNGAGSMevslvsREEKMEAFQLLYQTTPFVAF 246
                 689**************************************************9865555544433333222235677688899999************ PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledle 190
                 ++++aN+aI +a+ g++ +HiiD+++++ +QWp+L+++LasRp+gpp +lRiTg+ + +++   ele+  + L + A++lg+p++f++l +  + + l 
  PON58265.1 247 GYMVANEAICQAAVGKDYLHIIDLGMEHTFQWPSLIRTLASRPDGPPkQLRITGLIDDDQNLGAELEASMRALVDEASSLGIPLKFSLLSEPvTPSLLI 345
                 *******************************************888879********9999***************************84445788899 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  e+L+++++Eal  n  ++lh+ ++es  + +   ++L+++k+lsP++++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s++r+k+Er  
  PON58265.1 346 KEKLDLREEEALFFNGFMHLHKYVKESRGSLK---AILQALKKLSPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSQQRMKIERLH 441
                 9***********************88776666...9*************************************************************** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++ei+n+va eg++r+erhe+  +Wr++l++aGF+ + l  k  +qa+++l+ ++ dgy++ +e+gsl+lgWk+rp++ +SaW+
  PON58265.1 442 FAEEIRNIVAFEGSSRIERHERIDQWRRQLGRAGFQVLGL--KCLSQARMMLSVYGCDGYTLASEKGSLLLGWKGRPILLASAWQ 524
                 ************************************9887..589***************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MEALNIEINT LNHDLAIRRF CPARVEAEQG EWEGILKEID LCSPTDTTST PRLEAWEIDE  60
FVDSFINMEH YDINGENRES PEEEQIVFEM FSMASDGVCE DVPMSLEGDD MEISCSPVDA  120
FQVTDDANRD LVPIVEEVSH GVDQGLHLVH MLLACAEAVG CRDTQLADSI LSQIWASVSP  180
FGDSLQRVSY CFATGLKSRL SVLHNNVNTN GTFMNGAGSM EVSLVSREEK MEAFQLLYQT  240
TPFVAFGYMV ANEAICQAAV GKDYLHIIDL GMEHTFQWPS LIRTLASRPD GPPKQLRITG  300
LIDDDQNLGA ELEASMRALV DEASSLGIPL KFSLLSEPVT PSLLIKEKLD LREEEALFFN  360
GFMHLHKYVK ESRGSLKAIL QALKKLSPTL LTVVEQDANH NGPFFLGRFL ESLHYYSAIF  420
DSLEASLPRN SQQRMKIERL HFAEEIRNIV AFEGSSRIER HERIDQWRRQ LGRAGFQVLG  480
LKCLSQARMM LSVYGCDGYT LASEKGSLLL GWKGRPILLA SAWQVNNVPS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-77GRAS family protein