PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON58283.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 410aa MW: 46285.9 Da PI: 4.8811

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON58283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl PON58283.1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	54.4	2.9e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l PON58283.1 69 RGNFSKEEEEAIIKLHETLGNK-WSKIASHFP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGRGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFSKEEEEAI IKLHETLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLSL 120 KNSDPCGDEH DQSKECSSIT SSSSSSSSTT SVLSSGKRSS GVVQAEHGHQ SDEKSIPKRP 180 RIESREEHVE IGEKIDQDQE RKEPKEVQLV TSATSSASSY DSNVSNNTSD HQVGVSKLDL 240 EEDMDLLFDF EGSYDVSNIL QEVNKPEVSD YNPTILESVP LEADYEFWNM LDSLGTSLQP 300 NHEVQLQESE ANCDQSSNFG VQEFSPEIET KKWFRYLESE LGLEGTTAND NNQNRAMHQE 360 TVLVPDVNRY SFHNHIDDLI EAEPESDPCL GFSTAYQMWP SNLAQNSAAI

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGRGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSKEEEEAI IKLHETLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLSL  120
KNSDPCGDEH DQSKECSSIT SSSSSSSSTT SVLSSGKRSS GVVQAEHGHQ SDEKSIPKRP  180
RIESREEHVE IGEKIDQDQE RKEPKEVQLV TSATSSASSY DSNVSNNTSD HQVGVSKLDL  240
EEDMDLLFDF EGSYDVSNIL QEVNKPEVSD YNPTILESVP LEADYEFWNM LDSLGTSLQP  300
NHEVQLQESE ANCDQSSNFG VQEFSPEIET KKWFRYLESE LGLEGTTAND NNQNRAMHQE  360
TVLVPDVNRY SFHNHIDDLI EAEPESDPCL GFSTAYQMWP SNLAQNSAAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56160.1	1e-74	MYB family protein