PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON58853.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24045.1 Da    PI: 9.0613
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON58853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.43.7e-232269249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + e ksn+qvtfskRr gi+KKA ELS+LC+ +va i+fs++gkl+ +
  PON58853.1 22 KLEKKSNKQVTFSKRRSGIFKKAGELSILCGSDVAAIVFSPNGKLFCF 69
                6799*****************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MDVGDKIKTK RTLGRQKIEI KKLEKKSNKQ VTFSKRRSGI FKKAGELSIL CGSDVAAIVF  60
SPNGKLFCFG HPSVDDVIHR YLSGTSTTTS DATTYPESGT NGAATGEFNF MTYVEGVKEL  120
EAEKKRVAEA RLASASTRKE GEFRGSGGDG AWWDESVEGM ELEELEHYLE ALQELRRKSS  180
NKVQDLMVRK GGSPPPPLET FRVPSSARLG FGFENGHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-29M-type_MADS family protein