PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON59500.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

RAV

Protein Properties

Length: 390aa MW: 42362.3 Da PI: 9.5486

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON59500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.2	9.6e-14	73	121	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g PON59500.1 73 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 121 89**9888.8*****3.....5******99***********98 PP
2	B3	103.3	1.3e-32	211	310	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ tpsdv+k++rlv+pk++ae+h ++++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v Fk++ +++l++ PON59500.1 211 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSSNTSKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDIVSFKRSTGPDKQLYID 309 89*************************9888899*************************************************876677777776 PP E CS B3 96 v 96 + PON59500.1 310 W 310 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MDGISSSTTD ESTTSTTESI SLTAAPADPS PFAATKPSPP PAESLCRMGS GASVVLDGCG 60 GGSEAESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDVAAQRFR 120 GRDAVTNFKP LSSDTDQNDE IEASFLSSHS KAEIVDMLRK HTYNDELEQS RRNYGSRNSR 180 AKLNRSPSSA GHSGLGFGSG SDPLKAREQL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ 240 SSNTSKGVLL NFEDGGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKGLKA GDIVSFKRST 300 GPDKQLYIDW KARDNSNSNG SNGNGPVTGP VQQLEPVQMV RLFGVNIFKI PGSGVVVEAG 360 IGGGCNGKRI RDLELLELEC SKKPRIIGAL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MDGISSSTTD ESTTSTTESI SLTAAPADPS PFAATKPSPP PAESLCRMGS GASVVLDGCG  60
GGSEAESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDVAAQRFR  120
GRDAVTNFKP LSSDTDQNDE IEASFLSSHS KAEIVDMLRK HTYNDELEQS RRNYGSRNSR  180
AKLNRSPSSA GHSGLGFGSG SDPLKAREQL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ  240
SSNTSKGVLL NFEDGGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKGLKA GDIVSFKRST  300
GPDKQLYIDW KARDNSNSNG SNGNGPVTGP VQQLEPVQMV RLFGVNIFKI PGSGVVVEAG  360
IGGGCNGKRI RDLELLELEC SKKPRIIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-145	RAV family protein