PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON59652.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 374aa    MW: 42518.1 Da    PI: 4.7534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON59652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-18159201145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
       PON59652.1 159 KDTWSEEEDKVLIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 201
                      679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MKPCSKDDHA SQLPINVASS PKGNPYIQDF LHDILDHDHH FPANGSSSNP IFGSKTPCFD  60
PNLEAYTYGG CENNIGLFYD QYYNRSFAEN NNFQSGEYLD ILPCRNPIDM IGSNWSCFNL  120
NRQEDMKPLS FVVPDNHEVS SCITAENGYY KKVAMNKNKD TWSEEEDKVL IQAHAEIGNK  180
WAEIAKRLPG RTENSIKNHW NATKRRQHSK RKCRSKYPRG STLLQDYIKS LNLGTSSTTR  240
QNQRQTTATK NAINITNDTI ITDESVPFTQ PPKTTLEFCF TTNDYDGDFD EDPTDFCFDK  300
NIFQDGTYST IEYFLDEMLP FVADYSKLEP GSDHMELPVE DNNNIAAVMK SDGLVKDVDL  360
VEMISKVNEV IANV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-39MYB family protein