PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON59762.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24071.1 Da    PI: 9.3254
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON59762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.7e-241056248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                rien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gkly+
  PON59762.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYD 56
                8********************************************97 PP
2K-box59.91.1e-2084178599
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 ++++ +++ +   ++e++ Lk+eie Lq+ +R + G + ++++l eLq Le++Le  + +iRs+K++++ ++i+ l+ ke  l+ +nk+L+ k+e
  PON59762.1  84 QQQAIQTQSQLDAKEEISMLKQEIEILQKGLRYMFGGGAGTMTLDELQVLEKNLELWIYHIRSTKMDIMSREIQLLRDKEGILKAANKYLQDKIE 178
                 44446667777899******************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MARGKIQLRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYDLATK  60
GTMQGLIERY MKSTRGSLQA QADQQQAIQT QSQLDAKEEI SMLKQEIEIL QKGLRYMFGG  120
GAGTMTLDEL QVLEKNLELW IYHIRSTKMD IMSREIQLLR DKEGILKAAN KYLQDKIEVN  180
STATDLDFVP MMTNNIPYPL TVIQNEIFQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-79MIKC_MADS family protein