PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON60207.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23260.5 Da    PI: 10.3085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON60207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.3e-241764249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + e ksn+qvtfskRr g++KKA ELS+LC+ +vavi+fs++gkl+ +
  PON60207.1 17 KLEKKSNKQVTFSKRRSGLFKKAGELSILCGSDVAVIVFSPNGKLFCF 64
                6799*****************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MDVRKRTQGR QKIEIKKLEK KSNKQVTFSK RRSGLFKKAG ELSILCGSDV AVIVFSPNGK  60
LFCFGHPSVD AVISRYRNGT STTAPYPSTT NSESSAVQAA TQEYNLRTYV EATKELEAEK  120
KRAAEARLAS VLKKELGMSN GSNGGWWWEK PVEGMTLEEM ERHLGELYEL KRKVSTQAQG  180
LMMGKAGPPQ PLASFRGASG PLGFGFENAH N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29M-type_MADS family protein