PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON61387.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family SBP
Protein Properties Length: 184aa    MW: 20583.2 Da    PI: 6.9963
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON61387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.75.8e-42100176278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 Cq+++C+adl+eak+yhrrhk+Ce+h+ka+ v+v+gl+qrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk+++
  PON61387.1 100 CQADNCNADLTEAKHYHRRHKICEFHAKASFVIVNGLQQRFCQQCSRFHGLSEFDDSKRSCRRRLAGHNERRRKSSS 176
                 **************************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MEPNRGQGKR SFRLKMEDHQ LEGGAEEEEE EEEDEDDDVS GLGFGSNTIT TGDDDDMIMR  60
KRRPTMTGSS SSYTNTSSSS GTSTRRSGSG AGGSTRPSSC QADNCNADLT EAKHYHRRHK  120
ICEFHAKASF VIVNGLQQRF CQQCSRFHGL SEFDDSKRSC RRRLAGHNER RRKSSSDHHR  180
EGSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-40SBP family protein