PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON61903.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family YABBY
Protein Properties Length: 218aa    MW: 24375.9 Da    PI: 8.2538
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON61903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.11.1e-70131782170
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkv.vtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 
                 ++ s s+q+Cyv+CnfC+t+lavsvPs+slfk+ vtvrCGhC++llsvn++      + + h+++++  +  lle+ ++  +n+   ++++ +++  v 
  PON61903.1  13 HHLSPSDQLCYVHCNFCDTVLAVSVPSESLFKMnVTVRCGHCSNLLSVNMRGLL-FPPNQLHFGHAFFTPqhLLEDIRSPPSNM--LMINQPNPNDLVM 108
                 68899**************************866*************9988765.56778889998876523677777776665..5555555544443 PP

       YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      + ++ee+p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdish+eafsaaaknWahfP+ih gl
  PON61903.1 109 P---MRGRTEEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHKEAFSAAAKNWAHFPHIHLGL 178
                 3...368999****999*****************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MSASSAAAFS PDHHLSPSDQ LCYVHCNFCD TVLAVSVPSE SLFKMNVTVR CGHCSNLLSV  60
NMRGLLFPPN QLHFGHAFFT PQHLLEDIRS PPSNMLMINQ PNPNDLVMPM RGRTEEIPKP  120
PVVNRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDISHKEA FSAAAKNWAH FPHIHLGLMP  180
DQPVKKPNIR QQEADDMIMK DGFFSTTTPA ANVGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-88YABBY family protein