PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON62302.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 362aa MW: 40703.3 Da PI: 7.7174

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON62302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.5e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ ++ +G g+W+++++ g+ R++k+c++rw +yl PON62302.1 13 RGLWSPEEDDKLIRHITTHGHGSWSAVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	56.3	7.1e-18	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ PON62302.1 66 KGSFTQEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGHRCCSKQK VKRGLWSPEE DDKLIRHITT HGHGSWSAVP KLAGLQRCGK SCRLRWINYL 60 RPELKKGSFT QEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPQTHNLMSS SHHEIKAPKN KNITSFVVSH NHNHIKQSIS SSIFSVNSHE TITNNSSIIS 180 HPPNNSILTV PNSQTTAIST FNNQYQNPSS SNSACSSTST IVTSTSGAAW NLKAQNPSQN 240 DHITPNITSP YISSFSASGN VQDLSRSGLW DEFGILGSSF DPSEVLPRII SEGQQQSLQG 300 QNHDHDHRTL QDHEKEKIWE MEIDKVGNYS NFDHGFMEST LNISGVMCQD LSSMEYDLAW 360 NY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGHRCCSKQK VKRGLWSPEE DDKLIRHITT HGHGSWSAVP KLAGLQRCGK SCRLRWINYL  60
RPELKKGSFT QEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPQTHNLMSS SHHEIKAPKN KNITSFVVSH NHNHIKQSIS SSIFSVNSHE TITNNSSIIS  180
HPPNNSILTV PNSQTTAIST FNNQYQNPSS SNSACSSTST IVTSTSGAAW NLKAQNPSQN  240
DHITPNITSP YISSFSASGN VQDLSRSGLW DEFGILGSSF DPSEVLPRII SEGQQQSLQG  300
QNHDHDHRTL QDHEKEKIWE MEIDKVGNYS NFDHGFMEST LNISGVMCQD LSSMEYDLAW  360
NY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	4e-85	MYB family protein