PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON62965.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 706aa MW: 76144.4 Da PI: 5.7351

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON62965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg PON62965.1 277 PCPEFRK-GSCRQGDACEYAHG 297 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence
MCSGSKRKPS TGGSIMEGES EKQEGLRYNS SVLLELSASD DLDGFKTAVE EGGRDIDEAS 60 LWYGRRIGSK KMGFEERTPL MIAAMFGSKS VLNYILETGC VDVSRGCGSD RATALHCAAA 120 GASACSAEVV KLLLAASADT NSLDANGNRP CDLIVPARNS LAFNSRKKAL EVMLKGLEQT 180 SDLPEQVVDE LEDQERLEIS TPRVSKDGLE KKEYPVDLSL PDIKNGIYST DDFRMYTFKI 240 KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE 300 CWLHPAQYRT RLCKDETGCQ RRVCFFAHKQ EELRPLYAST GSAVPSPRSF ASSSLDIGSI 360 SPLALGSPSV LIPPPSTPTL TSSGASPPMS GNMWQSQSNI APPTLQLPGS RLKSTLSARG 420 MDLDVDLISL ESHRRRQQLL MDGISGISSP SSWNNGLSTA SPFATPGDRT GDLNRVGVKP 480 TNLENIFGSL DPSILPQLQG LSLDTAASQL QSPTGIQMRQ RMNQQLPSSY SLSLSSSPAR 540 SSPLFGVDSS GGAAAAAAMS SRAAAFAKRS QSFIERSAVN RHPGLSSPAG SSIMPSNLSD 600 WGSPDGKLDW GIQAEELNKL RKSASFGLRS SGGSYGGGPA ASPMAATVDE PDVSWVQSLV 660 VDAPPVNPVQ FNSFEEQQQC HYDNGASEMP PAWVEQMYME QEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence

MCSGSKRKPS TGGSIMEGES EKQEGLRYNS SVLLELSASD DLDGFKTAVE EGGRDIDEAS  60
LWYGRRIGSK KMGFEERTPL MIAAMFGSKS VLNYILETGC VDVSRGCGSD RATALHCAAA  120
GASACSAEVV KLLLAASADT NSLDANGNRP CDLIVPARNS LAFNSRKKAL EVMLKGLEQT  180
SDLPEQVVDE LEDQERLEIS TPRVSKDGLE KKEYPVDLSL PDIKNGIYST DDFRMYTFKI  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDETGCQ RRVCFFAHKQ EELRPLYAST GSAVPSPRSF ASSSLDIGSI  360
SPLALGSPSV LIPPPSTPTL TSSGASPPMS GNMWQSQSNI APPTLQLPGS RLKSTLSARG  420
MDLDVDLISL ESHRRRQQLL MDGISGISSP SSWNNGLSTA SPFATPGDRT GDLNRVGVKP  480
TNLENIFGSL DPSILPQLQG LSLDTAASQL QSPTGIQMRQ RMNQQLPSSY SLSLSSSPAR  540
SSPLFGVDSS GGAAAAAAMS SRAAAFAKRS QSFIERSAVN RHPGLSSPAG SSIMPSNLSD  600
WGSPDGKLDW GIQAEELNKL RKSASFGLRS SGGSYGGGPA ASPMAATVDE PDVSWVQSLV  660
VDAPPVNPVQ FNSFEEQQQC HYDNGASEMP PAWVEQMYME QEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein