PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON63619.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

LSD

Protein Properties

Length: 175aa MW: 18425.4 Da PI: 8.4405

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON63619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.5	1.7e-11	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPr A++V+Ca+C+t+ PON63619.1 7 CNGCRSILLYPRAATNVCCAICNTI 31 ***********************97 PP
2	zf-LSD1	49.7	6e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV PON63619.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	47.4	3.2e-15	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V PON63619.1 84 CGNCRTTLMYPYGAPSVKCAVCHYV 108 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MQSQLVCNGC RSILLYPRAA TNVCCAICNT ITSVPPPGME MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAPGSNQVA HVNCGNCRTT LMYPYGAPSV KCAVCHYVTN VGMGNMRVPI 120 PVHRPNGTNS GTMPSTSASM PHSQGQTVVV ENPMSVDESG KLVSNVVVGV TTDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	9e-76	LSD family protein