PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON63907.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 237aa    MW: 27394.1 Da    PI: 7.2503
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON63907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.3e-118451350
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                f +R++++ KKA EL  LC+ ev+++ + ++g++  ++
  PON63907.1  8 FQRRKATLKKKAGELGALCNSEVCIVCYEPNGEMEVWP 45
                889*******************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MEKSNKIFQR RKATLKKKAG ELGALCNSEV CIVCYEPNGE MEVWPEDPTK AHSIIHKYYS  60
RLESCNNNKK REKLNLSDML EKKMKKLEEQ VGNHHHHHHH HHHLDNISVN TNTTNGMGFS  120
IVLPSLWDEE LDKFSNDSLM GLSQCLEAKI QKLDEKIELL KGKQRLVSQT QFLKEEHCDC  180
DLPPSLPQQY VSVIKPQEYA ASSSHAYSNM LYGDIAQHQS INNFPVHGLE QYWTKMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-11M-type_MADS family protein