PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON63909.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25924.5 Da    PI: 6.9282
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON63909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.51.3e-1111491250
                HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 f +R++++ KKA EL  LC+ ev+++ + ++g++  ++
  PON63909.1 11 IFQRRKATLKKKAGELGALCNSEVCLVCYEPNGEVDVWP 49
                5999*******************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MMMNREKSSK IFQRRKATLK KKAGELGALC NSEVCLVCYE PNGEVDVWPE DPAKAQSIIH  60
RYYSRLESSS SNNAYKKRKE KLNLSDMLEK KMKKLEEQVG NQHHHYLDNN SSINTANTID  120
CVGFPRVLPS LWDEELDNLS GDSLMGLSQC LEAKIRKLDE KIELLKQTST QSGKEEHYID  180
LPPSLLPQQY VSVIMPQEYA SSSSHACSNM LHGDIAPLHQ LCNISYTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.16e-16M-type_MADS family protein