PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON64344.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 230aa    MW: 25091.7 Da    PI: 5.8988
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON64344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.4e-42781771100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++
  PON64344.1  78 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEIPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNELQAQLAKAQA 176
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  PON64344.1 177 E 177
                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MEFKAKVPLT PPRLTVPTPF SSSQYSPNNS STTTSSPTPN SSQLSSPPPS QSSPTSTTTV  60
DPFPPPPPPP PPAIVMSPCA ACKILRRRCV DKCVLAPYFP PTEPLKFTIA HRVFGASNII  120
KFLQEIPESQ RADAVSSMVY EANARIRDPV YGCAGAICQL QKQVNELQAQ LAKAQAELVN  180
MQCQQANLIA LICMDVTQLQ EPNSQQQPYV DTSCFLDDNT LGTTWEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-65LBD family protein