PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON64890.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 382aa MW: 42722.8 Da PI: 6.9614

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON64890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5e-18	41	88	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PON64890.1 41 RGPWTVEEDLTLFNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 88 89********************************************97 PP
2	Myb_DNA-binding	50.9	3.5e-16	94	137	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PON64890.1 94 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 137 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MDSINNIVKS DGRSSISGNS SSSNSSVQSD QESEMISDLR RGPWTVEEDL TLFNYIANHG 60 EGRWNSLARC AGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA 120 QHLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLVER IQAATATAAS 180 STATATATHH QLNNMAISNN NFNQSPAAGQ AAAVIMPMNN SNTTFNDQFG GAASVTTYTP 240 ENSSSDSFGA QVSPVSELTA ENYYSTSTLN PNPPPPPPTH GQYSYHQVGY NNYYVPATDH 300 QSIMRTTTTT TTTAASTTPS SAGYDHNNLS SSTTTTDHQL GFQSMEQNSS YFNNWNLDQG 360 MDSLWDVEDI WLLQQHLNNG NF

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MDSINNIVKS DGRSSISGNS SSSNSSVQSD QESEMISDLR RGPWTVEEDL TLFNYIANHG  60
EGRWNSLARC AGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA  120
QHLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLVER IQAATATAAS  180
STATATATHH QLNNMAISNN NFNQSPAAGQ AAAVIMPMNN SNTTFNDQFG GAASVTTYTP  240
ENSSSDSFGA QVSPVSELTA ENYYSTSTLN PNPPPPPPTH GQYSYHQVGY NNYYVPATDH  300
QSIMRTTTTT TTTAASTTPS SAGYDHNNLS SSTTTTDHQL GFQSMEQNSS YFNNWNLDQG  360
MDSLWDVEDI WLLQQHLNNG NF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-84	MYB family protein