PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON65036.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 417aa MW: 47530.7 Da PI: 7.1057

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON65036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	154	177	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H PON65036.1 154 YVCGVCGRKCKTNLDLKKHFKQlH 177 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MNPICNASSS ATLQPLPSLF FRHSKQLHGT LPLKSKPPPR PTLRFKWPIP IRACAAAHEI 60 DMVKTKQGVY APKQKKVVIL WDLDNKPPRG PPYQAAMALK RVAQRFGDVV DASAYANRHA 120 FVHLPQWVLE QRRDRKRLDI LERKGLVTPP SETYVCGVCG RKCKTNLDLK KHFKQLHERE 180 RQKKLNRMRS LKGKKRQRFK ERHIAGNYKY NEAARSLITP KVGYGLASEL RRAGVFVKTV 240 EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSETLR RAREANLGTV VVGDWDKALG 300 KHADVWVPWI GVENGEISEK DLVPRSRRSS EVFDDHGLFS SGDFGEGVEI DSRLDSLVDE 360 LVVRSSQFNG VRVSAFSEGE EEEDDWVGEE MGEDYLMEDS DDDDDDDDDS EDEDGIF

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MNPICNASSS ATLQPLPSLF FRHSKQLHGT LPLKSKPPPR PTLRFKWPIP IRACAAAHEI  60
DMVKTKQGVY APKQKKVVIL WDLDNKPPRG PPYQAAMALK RVAQRFGDVV DASAYANRHA  120
FVHLPQWVLE QRRDRKRLDI LERKGLVTPP SETYVCGVCG RKCKTNLDLK KHFKQLHERE  180
RQKKLNRMRS LKGKKRQRFK ERHIAGNYKY NEAARSLITP KVGYGLASEL RRAGVFVKTV  240
EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSETLR RAREANLGTV VVGDWDKALG  300
KHADVWVPWI GVENGEISEK DLVPRSRRSS EVFDDHGLFS SGDFGEGVEI DSRLDSLVDE  360
LVVRSSQFNG VRVSAFSEGE EEEDDWVGEE MGEDYLMEDS DDDDDDDDDS EDEDGIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	174	RRDRKRLDILERKGLVTPPSETYVCGVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-164	C2H2 family protein