PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON65309.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21534.2 Da    PI: 10.6539
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON65309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.3e-111150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n s r+ tf kRr+g+lKK + L + C ++ + ii+s+
  PON65309.1 11 IYNPSARKGTFKKRRKGLLKKLSNLTTFCCIDTCAIIYSP 50
                779999*********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MARKKLNLAY IYNPSARKGT FKKRRKGLLK KLSNLTTFCC IDTCAIIYSP YEAQPKLFPS  60
AAGVHHVLVR FRKTPEMEQR KKMLNQEGLL SQRIAKSIEQ LKRQRNDNRE WELRQVIFQS  120
LAGNTCLQGF SVKDFNDLRW LIDRNLYDIH KCKDRIIHNK MLVPLAAAAA PGAVADGKQT  180
RGGESTIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKLNLAYIYNPSARKGTFKKRR
21732RKGTFKKRRKGLLKKL
32226KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-43M-type_MADS family protein