PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON65627.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 246aa    MW: 27213.9 Da    PI: 4.3899
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON65627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-3971081101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf  ++ +++fa+vhk+FGasnv+kll +lp ++r+da++++ yeA ar+rdP+yG+v++i++lqqq++ l++e++ ++
  PON65627.1   7 SCGACKFLRRKCSSECIFAPYFSYDEaASHFAAVHKVFGASNVSKLLLHLPLHNRSDAATTISYEALARMRDPIYGCVAHIFALQQQVAYLQEEIEIIG 105
                 6**********************98868*******************************************************************9998 PP

      DUF260  99 eel 101
                 +++
  PON65627.1 106 NQI 108
                 875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MTGFGSSCGA CKFLRRKCSS ECIFAPYFSY DEAASHFAAV HKVFGASNVS KLLLHLPLHN  60
RSDAATTISY EALARMRDPI YGCVAHIFAL QQQVAYLQEE IEIIGNQIAN NVTAGLASCG  120
SSEATNNNNN NNNNNNNNNN SLNSGSQLFS EHVVLNSQYY QNEQEVLLSQ IQNSTGSFSN  180
PVFDEQMGVQ LLQPPYGWGN EENVVCNSLS DPLERLFEGI QQENSANNPW SDERPYVENC  240
IGPIWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.16e-60LBD family protein