PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON65764.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26968 Da    PI: 8.1273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON65764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.81.3e-088451350
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +  R++++ KKA EL + C+ ev+++ + + g++  ++
  PON65764.1  8 YEGRKATLKKKAGELVTRCNSEVCLVCYDPYGQVDVWP 45
                567******************************99997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
METSRKVYEG RKATLKKKAG ELVTRCNSEV CLVCYDPYGQ VDVWPEDPAK AHSVIRKYYS  60
SLQQEVEEED GGGGGGGGGP SPSPSSSSST PPPPSHHHHH HHHHHTKKRK REKLNLSDML  120
ERKRKKLQEQ VDNQFLEEDN VGNKNNDIMG FSFLPVWYDE LDNLSKNSLM GLSDYLNARI  180
RSLDERISRT QFQKQRYDQE VQPPQPSHVG RSYVMADGGV LQFSLNLPQQ STISWTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114KKRKREKL
2107125KKRKREKLNLSDMLERKRK
3107126KKRKREKLNLSDMLERKRKK
4108127KKRKREKLNLSDMLERKRKK
5109128KKRKREKLNLSDMLERKRKK
6122126RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.14e-10M-type_MADS family protein