PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON65952.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 649aa MW: 73982.1 Da PI: 8.1682

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON65952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.8e-07	461	502	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W eE ell ++ +++++g +W+ I++++g+gR+ +++ PON65952.1 461 KPWGREEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 502 68***********************************99876 PP
2	Myb_DNA-binding	28.1	4.7e-09	592	636	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a ++ g+t +qck ++ PON65952.1 592 VWSAVQERALVQALKTFPKEtnqRWERVATAVP-GKTVNQCKKKFT 636 6******************************.*******986 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MVVQSDIRLI SYSQEIVDGK PIHVSSNSLP IKALRLEPAG HSFHQAALKL LGCVEEVVED 60 GDQKVAEDKE QNYMPSSDSY STKGKKKSGA EGKQQDHYAL LGLAHLRYLA TEEQIRKSYR 120 ETALKYHPDK QAALLLAEET EAAKQAKKDE IESHFKSVQE AYEVLIDPVK RRIYDSTDEF 180 DDEIPTDCAP QDFFKVFGPA FMRNGRWSVN QPVPSLGDDK TPLGEVDSFY NFWYSYRSWR 240 EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEESAR IRTLVDNAYK RDPRILRRKE 300 EERAEKQRKK QAKYLAKKLQ EEEAARAAEE EKRRKEEEER QAAEAALQQK KVKEKEKKLL 360 RKERSRLRTL SGPVVSQNLL NISGEDIESL CMALNIEQLR NLCDKMEGKG GLEMAEFLRD 420 ARGYSGNLET KKEVEKKTEL HNGSVDTNGS IPFSSSEKKE KPWGREEIEL LRKGMQKYPK 480 GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA PSIASPLTTR 540 DETEGVSIPQ MPENGATQKD TSQDSPNSGV NDESPSDSNA ANGVISSSEQ DVWSAVQERA 600 LVQALKTFPK ETNQRWERVA TAVPGKTVNQ CKKKFTLLKE NFRSKKNAA

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MVVQSDIRLI SYSQEIVDGK PIHVSSNSLP IKALRLEPAG HSFHQAALKL LGCVEEVVED  60
GDQKVAEDKE QNYMPSSDSY STKGKKKSGA EGKQQDHYAL LGLAHLRYLA TEEQIRKSYR  120
ETALKYHPDK QAALLLAEET EAAKQAKKDE IESHFKSVQE AYEVLIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FMRNGRWSVN QPVPSLGDDK TPLGEVDSFY NFWYSYRSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEESAR IRTLVDNAYK RDPRILRRKE  300
EERAEKQRKK QAKYLAKKLQ EEEAARAAEE EKRRKEEEER QAAEAALQQK KVKEKEKKLL  360
RKERSRLRTL SGPVVSQNLL NISGEDIESL CMALNIEQLR NLCDKMEGKG GLEMAEFLRD  420
ARGYSGNLET KKEVEKKTEL HNGSVDTNGS IPFSSSEKKE KPWGREEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA PSIASPLTTR  540
DETEGVSIPQ MPENGATQKD TSQDSPNSGV NDESPSDSNA ANGVISSSEQ DVWSAVQERA  600
LVQALKTFPK ETNQRWERVA TAVPGKTVNQ CKKKFTLLKE NFRSKKNAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	355	KRRKEEEERQAAEAALQQKKVKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-141	MYB family protein