PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON66184.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 260aa MW: 28210.8 Da PI: 8.4806

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON66184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.4e-42	47	146	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l +lpe++r da++slvyeA+ r+rdPvyG++g+i++lqqq+++l+ael+++++ PON66184.1 47 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHKVFGASNVSKMLMELPESQRADAANSLVYEANLRLRDPVYGCMGLISALQQQIQTLQAELNAVRT 145 7**********************************************************************************************9998 PP DUF260 100 e 100 e PON66184.1 146 E 146 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MSRDREGLDE IGKRIRADAP NNTNSDQIMG RRVQSFGPPG TLNTITPCAA CKLLRRRCAE 60 ECPFSPYFSP QEPQKFAAVH KVFGASNVSK MLMELPESQR ADAANSLVYE ANLRLRDPVY 120 GCMGLISALQ QQIQTLQAEL NAVRTEILRY KYREATSHHI ISSSTTTTRT AHHQAALANL 180 VSPHNIHHGV VSIASLPMPQ AISHSQPPAP PPPPPPPPPP PPSIVVSSSS TTSSTSSLYT 240 PSTNTTGYSS ISSDNVPYFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	7e-78	LBD family protein