PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON66440.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HSF
Protein Properties Length: 315aa    MW: 35060.2 Da    PI: 5.5376
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON66440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36231132101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k+ll++i+
    PON66440.1  23 FLTKTYQLVDDPAIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDYFRRGEKRLLCEIQ 110
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    PON66440.1 111 RRK 113
                   *98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MAAETNGDSS AASESQRPLP TPFLTKTYQL VDDPAIDDVI SWNDDGSTFI VWNPTVFARD  60
LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFSNDYFRR GEKRLLCEIQ RRKIATPTAT  120
TASPAVVTVS AIPTARPIIS PSNSGEEQVI SSNSSPVRAP AELVDENERL RKENQQLTKE  180
LAEMKSLCSN IFSMVSSYAC GQSERGFLAR ESGFREVKPL DLMPGKRFGG ETEGAEAMAD  240
GKKTSPKLFG VTIGKKRGRA DDGGDAAEEE VEDETDLRLH QPAGGVDVKS EPLDVDHQEK  300
PWLKQCHRTN QRVCN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260GKKRGRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-91HSF family protein