PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON66738.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family LBD
Protein Properties Length: 242aa    MW: 26166.8 Da    PI: 8.8584
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON66738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.47.3e-312103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+
  PON66738.1   2 SCNGCRVLRKGCSESCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVET 100
                 6*********************9999777889****************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  PON66738.1 101 VLR 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELIGGGGGA  120
TTPTTPTAAS DENSEAEVTC TDIWKIRDPN SGSRFSTSRS RLSPKRKRSD QPAAKLVRNT  180
TDLDLRLTPT FPAKPATQKS ELRRRGSPSM NSEESVTTTC FESGLADQQA IGGERKLLNL  240
FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-86LBD family protein