PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON68788.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 690aa MW: 76038.7 Da PI: 9.262

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON68788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	591	640	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ PON68788.1 591 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 640 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MVLQKRLDYG FNGYQVPAMP RATRSARRRG TVRKRVEENQ MCAFDLLATV AGNLLLEKQS 60 TPISSNTSNQ KDKCSIVNQD EQDGNKTLKV EPCDQGSCER NFFVSENVSH APNVNHSSKE 120 SSFPQNDDHS GFTSIMTTSN CSERLVAKNS DNGKIKNEVG SFCSQIEEGL SMYRESGGCK 180 LEGEAKTLVK DESNSTGKVL IGTVADMCSS EYPAHFKGKP PAMPSSDSSP KAPLCGDHVP 240 QSLLPSHRDN VKVVSRDDDE NSSGCTHPST TTRYFKRAPR IGDRRIRKIL ASKHWKVGSK 300 FKDETLSNPD GFIKPIYRSR KDCYKRQRAQ MNVPFKKRKL FNHSTVWTSD GGTNNHGFFN 360 STEKGIGDAS ESCPKLQGGT GTSCSVAGQH TSFQRRDSHV KLRIKSFRVP ELFIEIPETA 420 TVGSLKRTVM EAVTAILGGG LHIGVLLKGN KVRDDNITLL QSGISHDNQL DALGFTLEPN 480 PSQSPPPLCS GDSPHLLPGD APQLLARSPP NQDIVDHANA NVPPEPHVAS LGNLVESDHD 540 SAPSPTETSV DKSTTDSKAL VPVPAISVEA LSVVPALRKS KRSEIAQRRI RRPFSVSEVE 600 ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL 660 LDRVLCAHAY WSQQQAKQQL KQQPETCLLL

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MVLQKRLDYG FNGYQVPAMP RATRSARRRG TVRKRVEENQ MCAFDLLATV AGNLLLEKQS  60
TPISSNTSNQ KDKCSIVNQD EQDGNKTLKV EPCDQGSCER NFFVSENVSH APNVNHSSKE  120
SSFPQNDDHS GFTSIMTTSN CSERLVAKNS DNGKIKNEVG SFCSQIEEGL SMYRESGGCK  180
LEGEAKTLVK DESNSTGKVL IGTVADMCSS EYPAHFKGKP PAMPSSDSSP KAPLCGDHVP  240
QSLLPSHRDN VKVVSRDDDE NSSGCTHPST TTRYFKRAPR IGDRRIRKIL ASKHWKVGSK  300
FKDETLSNPD GFIKPIYRSR KDCYKRQRAQ MNVPFKKRKL FNHSTVWTSD GGTNNHGFFN  360
STEKGIGDAS ESCPKLQGGT GTSCSVAGQH TSFQRRDSHV KLRIKSFRVP ELFIEIPETA  420
TVGSLKRTVM EAVTAILGGG LHIGVLLKGN KVRDDNITLL QSGISHDNQL DALGFTLEPN  480
PSQSPPPLCS GDSPHLLPGD APQLLARSPP NQDIVDHANA NVPPEPHVAS LGNLVESDHD  540
SAPSPTETSV DKSTTDSKAL VPVPAISVEA LSVVPALRKS KRSEIAQRRI RRPFSVSEVE  600
ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL  660
LDRVLCAHAY WSQQQAKQQL KQQPETCLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-152	MYB_related family protein