PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON69164.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28573.4 Da PI: 10.0872

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON69164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.3	1.6e-31	24	73	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ PON69164.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73 79***********************************************8 PP
2	K-box	103	3.9e-34	92	188	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+ s++ea+a+ +qqe+akL+ +ie+Lq+ +R llG+ ++s + +eL+ Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e PON69164.1 92 SNIGSVSEANAQFYQQEAAKLRTQIETLQKGIRELLGDTVSSANTRELKGLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 188 333449****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MAYQNKSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANQSVKST IERYKKASSD SSNIGSVSEA NAQFYQQEAA KLRTQIETLQ 120 KGIRELLGDT VSSANTRELK GLETKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ 180 LLRAKIAENE RNQNMSLNMA GGGNYELMQQ EQQQQPAAAF DSRNYFQVNA LQPNHHQYQR 240 QDPMALQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-120	MIKC_MADS family protein