PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON69952.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28274 Da    PI: 7.0367
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON69952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +rienk+nrqv+fskRrng+lKKA+ELSvLCdaev viifss+gkl e+ 
  PON69952.1  9 ERIENKINRQVSFSKRRNGLLKKAYELSVLCDAEVGVIIFSSHGKLSEFG 58
                69**********************************************95 PP
2K-box74.72.5e-25741731100
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 y++s++++    +a++l  e+ kL++++e+Lqr  Rh+lGe+Le+L lkeLq+Le++L + l++ R++ +++++e +eel++k ++l+e +++L+ kle
  PON69952.1  74 YASSQDNNIVGDEAQNLLLEIPKLQAKYESLQRAERHFLGENLEELGLKELQNLEKRLARTLSQARQRTMHMMVERLEELRRKVRDLEELHEQLKPKLE 172
                 6678888888888**********************************************************************************9998 PP

       K-box 100 e 100
                 e
  PON69952.1 173 E 173
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGRGRVVLER IENKINRQVS FSKRRNGLLK KAYELSVLCD AEVGVIIFSS HGKLSEFGST  60
NVNTTLERYR QFCYASSQDN NIVGDEAQNL LLEIPKLQAK YESLQRAERH FLGENLEELG  120
LKELQNLEKR LARTLSQARQ RTMHMMVERL EELRRKVRDL EELHEQLKPK LEEVRNMCLC  180
IESQGDLNIV ADNKFKSDST QPNHIESEST ADKGPYTKFL SEETIADREG RITGVGSSRN  240
QDWFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-44MIKC_MADS family protein