PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON70223.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 311aa MW: 35027.3 Da PI: 7.345

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON70223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.2e-13	11	56	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ v+++G+++W++I ++ + Rt+k+c++rw + PON70223.1 11 KGPWKAEEDEVLINHVRKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 56 79***********************8887799********87 PP
2	Myb_DNA-binding	41.7	2.7e-13	67	106	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++ eE+ +++ +q+G++ W++Ia +++ gRt++++k++w PON70223.1 67 KFSLEEERVVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 106 799***************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MEGNREEGIR KGPWKAEEDE VLINHVRKYG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP 60 NLKNGCKFSL EEERVVIELQ AQFGNKWARI ATYLPGRTDN DVKNFWSSRQ KRLARILQTS 120 PNSSKSQKNK GEGPSYNEVP TFEARNFSSS SGESSSKVLP RSSSCIQNSD MIKMVPLPDL 180 VNPSKLVNFD QDLGHQPEFN TTEKNLCIGS QPLIPFPPAL KSQPDLTFSS ESQDHLARFG 240 DPYFDVFGSL DASKLGNGAE LSFGPPFLEP TESCRTGGAI EKFDTTPDVF FDDFPIDMFD 300 QIELLPKSSQ Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	3e-76	MYB family protein