PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON71216.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 384aa    MW: 43691.2 Da    PI: 8.2469
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON71216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53.2e-171248440
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                  +  r vtf kR++g++KKA+ELS+LC+++v++i+ 
  PON71216.1 12 AKDKSRRVTFEKRKKGLIKKAKELSTLCAVRVCLIVH 48
                5567799****************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MGRGKLPLRL IAKDKSRRVT FEKRKKGLIK KAKELSTLCA VRVCLIVHNV KNGSLDTPTT  60
LPQHPSEVRP LIEAYEASRI QNPTSRRHLT MSDFYAERIK KLNTKKEKLH QQTNDLTQKT  120
HRNYHDNKLP MWQTFIDELS ANHVFELYSF LKDKVEQVEK HIRFQSSQFA TQEQQMNMLQ  180
PSFHYNSSHH DHDHAVAANE MFGQLPYYFP PQPWIHHEQA SFSKIPFDLN DPYSNGSFTR  240
MLTSSVATDD HDHQYYGSSN SAILEGPGDD YDMRCNMFNM TSTGPPMLGC GMQQIDQNGM  300
VIFSNNPMAI QPYVHQQPLL PLLASTSATD SLYCPTMELI HRQSPGHSGQ IAGGSDQAEV  360
KYHYQNTNSF QLKNGNATPA GPGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11326KDKSRRVTFEKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-14M-type_MADS family protein