PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON72265.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 421aa MW: 47306.1 Da PI: 6.8452

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON72265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl PON72265.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46	1.2e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ PON72265.1 67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPTTHKPIS DNNSTSFMEA KDKKNCRDEK ESFGVIPLHH HDHQPQYHEH HHQSNTLASN 180 HGPAFLISDL AYYDGSTNGV VLLTEACSKD QTNLININTS NKHHQPSSNF DSSLSFFDQF 240 TSSSSTIEPV SGYNSEFVSQ FHNSSSTIRP SFGHNHNNSF GGFSSMPSLA SSGADFSDNS 300 ASRVSSFFMN EVKETSSNSS NVSNYAGFQV NNNNNIVDHN GGFSNWDADN KLESLIFQQF 360 QHHHQNQVNG IIKSEELMTR TSSWQESGQL HVQGSVDFGS CPLTSLSEDL TGANFDVFHQ 420 I

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPIS DNNSTSFMEA KDKKNCRDEK ESFGVIPLHH HDHQPQYHEH HHQSNTLASN  180
HGPAFLISDL AYYDGSTNGV VLLTEACSKD QTNLININTS NKHHQPSSNF DSSLSFFDQF  240
TSSSSTIEPV SGYNSEFVSQ FHNSSSTIRP SFGHNHNNSF GGFSSMPSLA SSGADFSDNS  300
ASRVSSFFMN EVKETSSNSS NVSNYAGFQV NNNNNIVDHN GGFSNWDADN KLESLIFQQF  360
QHHHQNQVNG IIKSEELMTR TSSWQESGQL HVQGSVDFGS CPLTSLSEDL TGANFDVFHQ  420
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	5e-83	MYB family protein