PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON72421.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 441aa MW: 49189.2 Da PI: 5.3278

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON72421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteEde+lv++++ G g+W++ ++ g+ R++k+c++rw +yl PON72421.1 14 KGRWTTEEDEILVKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.6	5.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++++v++++ lG++ W++Ia +++ gRt++++k++w+++l PON72421.1 67 RGNISSEEEDIIVKLHATLGNR-WSLIATHLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MGRAPCCEKV GLKKGRWTTE EDEILVKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SSEEEDIIVK LHATLGNRWS LIATHLPGRT DNEIKNYWNS HLSRKIHTFR 120 RFTTTSTGQT LPNIMEITKV KRKGGRTSRS AMKKNNERSH QRKNNTNIKD GLGLDHHHHH 180 HHLYQDEVNI SGPQTPTMEK ETLSFTNIDR DPYLSDQHQP SSPCQEAGGG GGGGRAIGQV 240 VSSSELGQLS LCPSEGKTTE NSMSLGRPSF EKEGGHDEVL GPYDEESIDD GMLLCFNDIL 300 DNELLNPNGV LTLSEESLNV SGALTTRTAN NGSNTIPNYN VASNNEELEI STSGNLSSSG 360 EVGDWLDDVV GVDFWGNWES STSSATSVTQ GHDHEMWDNE REKMLSLLWD SDISWELEDN 420 NHNFEEINSD KQNAMVAWLL S

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MGRAPCCEKV GLKKGRWTTE EDEILVKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSEEEDIIVK LHATLGNRWS LIATHLPGRT DNEIKNYWNS HLSRKIHTFR  120
RFTTTSTGQT LPNIMEITKV KRKGGRTSRS AMKKNNERSH QRKNNTNIKD GLGLDHHHHH  180
HHLYQDEVNI SGPQTPTMEK ETLSFTNIDR DPYLSDQHQP SSPCQEAGGG GGGGRAIGQV  240
VSSSELGQLS LCPSEGKTTE NSMSLGRPSF EKEGGHDEVL GPYDEESIDD GMLLCFNDIL  300
DNELLNPNGV LTLSEESLNV SGALTTRTAN NGSNTIPNYN VASNNEELEI STSGNLSSSG  360
EVGDWLDDVV GVDFWGNWES STSSATSVTQ GHDHEMWDNE REKMLSLLWD SDISWELEDN  420
NHNFEEINSD KQNAMVAWLL S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	5e-77	MYB family protein