PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON72477.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 861aa MW: 95545.4 Da PI: 8.0699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON72477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	183	202	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f++ G C++G+ C+F H PON72477.1 183 LCKDFSA-GRCRRGNHCPFVH 202 9****.*********** PP
2	zf-CCCH	21.1	5.3e-07	241	262	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC++f + G C++G +CkF Hg PON72477.1 241 ALCNDFVK-GRCRRGTSCKFEHG 262 79****.*********998 PP
3	zf-CCCH	17.4	8.1e-06	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G C+ G C+F+H PON72477.1 305 PCKFFAA-GNCRNGKYCRFSHH 325 79999.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MSGSGRKRSS KWDLRDQPQF EDVNVQDDGW PGKTGRSVYP RESGHGWQSP ELAGSNGSKW 60 SALETNDHRS KHDSMFLPRE TFSGSRGSHK NENIDKDRNR YVTDSVAWDA DEDYGTRMSP 120 GLDEWRQKNH SQSPKSGWSR SMRDRSRSRS KSRGRSRSPV HGLRRESGLL ERSRSRSGVS 180 GQLCKDFSAG RCRRGNHCPF VHEGDEAYED YWDSRQRKGG SSKYSTLDTR DYPSRSGQSS 240 ALCNDFVKGR CRRGTSCKFE HGASDGFSLG SANEVSRERE TDRRRRDTST DRGVEHEARR 300 NIDIPCKFFA AGNCRNGKYC RFSHHTQTYV SPDRKLQDKW ALGRKADDVD QVWDDPKWND 360 KINASDASKF SEDINGNITA PETDTAEASM GLSESRRTEK WLDDMDMSPD WNYTVPSASH 420 VVKEEHTRIT QHSESSKDLS LTTCKQSVTQ EAASARINGV PAVVQPMIPE NSLFQPKHDL 480 RDDSAIALPY DDNNAVRINV SSYAGLNNIF DQNSQRVSVY PFPGLNTIGQ SQAVIPTELE 540 GGILKNLQNN KLLTEGISVT KPDFRDAKTS LINSGIDPSQ MMVNGEQATH LTNLSASLVQ 600 LFGNGQQFPQ LYAALNSNNS AGTPSFTGGP ATSSTILPVA ATGPQKHNDP RQNSMESKIP 660 EISNNPPSVL TSNTVKADSD TKPEIQLKNL TPLSFPGISD VTDCQQAGGS VEEPNQQRES 720 LIQLEPNPIS KVTEEKIDLN FGGSKKAPEE NSKVDESDPL DGVDKEGPND GKKNKDVKGV 780 RAFKFALVEF VKELLKPTWK DGQIGKDAYK TIVKKVVDKV TGTMQGASIP QTQEKIDNYL 840 SFSKAKLTKL VQAYVEKAQK G

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MSGSGRKRSS KWDLRDQPQF EDVNVQDDGW PGKTGRSVYP RESGHGWQSP ELAGSNGSKW  60
SALETNDHRS KHDSMFLPRE TFSGSRGSHK NENIDKDRNR YVTDSVAWDA DEDYGTRMSP  120
GLDEWRQKNH SQSPKSGWSR SMRDRSRSRS KSRGRSRSPV HGLRRESGLL ERSRSRSGVS  180
GQLCKDFSAG RCRRGNHCPF VHEGDEAYED YWDSRQRKGG SSKYSTLDTR DYPSRSGQSS  240
ALCNDFVKGR CRRGTSCKFE HGASDGFSLG SANEVSRERE TDRRRRDTST DRGVEHEARR  300
NIDIPCKFFA AGNCRNGKYC RFSHHTQTYV SPDRKLQDKW ALGRKADDVD QVWDDPKWND  360
KINASDASKF SEDINGNITA PETDTAEASM GLSESRRTEK WLDDMDMSPD WNYTVPSASH  420
VVKEEHTRIT QHSESSKDLS LTTCKQSVTQ EAASARINGV PAVVQPMIPE NSLFQPKHDL  480
RDDSAIALPY DDNNAVRINV SSYAGLNNIF DQNSQRVSVY PFPGLNTIGQ SQAVIPTELE  540
GGILKNLQNN KLLTEGISVT KPDFRDAKTS LINSGIDPSQ MMVNGEQATH LTNLSASLVQ  600
LFGNGQQFPQ LYAALNSNNS AGTPSFTGGP ATSSTILPVA ATGPQKHNDP RQNSMESKIP  660
EISNNPPSVL TSNTVKADSD TKPEIQLKNL TPLSFPGISD VTDCQQAGGS VEEPNQQRES  720
LIQLEPNPIS KVTEEKIDLN FGGSKKAPEE NSKVDESDPL DGVDKEGPND GKKNKDVKGV  780
RAFKFALVEF VKELLKPTWK DGQIGKDAYK TIVKKVVDKV TGTMQGASIP QTQEKIDNYL  840
SFSKAKLTKL VQAYVEKAQK G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	286	RERETDRRRR
2	282	287	DRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-12	C3H family protein