PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON72706.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 408aa MW: 46655.6 Da PI: 7.9598

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON72706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi tH PON72706.1 27 YFCEYCGICRSKKSLITSHILTH 49 78********************6 PP
2	zf-C2H2	20.8	1.1e-06	74	95	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H PON72706.1 74 TCEECGVTFKKPAYLKQHMQSH 95 6*******************99 PP
3	zf-C2H2	17.5	1.2e-05	129	153	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC+ s++rk++L+rH+ H PON72706.1 129 YVCSvdDCHSSYRRKDHLTRHLLGH 153 99*******************9877 PP
4	zf-C2H2	11	0.0013	158	183	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ Fs + n+krH + H PON72706.1 158 FKCPieNCKCEFSIQGNMKRHVKEqH 183 89********************9988 PP
5	zf-C2H2	17.5	1.2e-05	198	222	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F+ s L++H +H PON72706.1 198 YVCQeaGCGKAFRFASKLRKHEDSH 222 99*******************9888 PP
6	zf-C2H2	19.6	2.4e-06	289	313	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+++Fs+ksnL++H + H PON72706.1 289 KCMykGCDRTFSTKSNLNQHVKAaH 313 577779**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MEEEAGGGGG GGEEERPIFL FRDVRRYFCE YCGICRSKKS LITSHILTHH EEELDKARAE 60 EEDDATEGVK GSNTCEECGV TFKKPAYLKQ HMQSHSPEYQ VGRPPEKLHQ EGLNHATFLV 120 FVILSQRPYV CSVDDCHSSY RRKDHLTRHL LGHRGKLFKC PIENCKCEFS IQGNMKRHVK 180 EQHNGDNPST STESEKQYVC QEAGCGKAFR FASKLRKHED SHVKLDSVEA VCAEPGCMKI 240 FTNEQCLKEH IHSCHQHITC EVCGTKQLKK NLKRHLRTHE GKGPVESIKC MYKGCDRTFS 300 TKSNLNQHVK AAHLKQKPFV CSFSGCGARF SYKHVRDNHE NTGCHVYTHG DFEEADEQFR 360 SRPRGGRKRK YPTVEMLVRK RVSPPNQLDG SFGCFSNFLC QDEEQDEP

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MEEEAGGGGG GGEEERPIFL FRDVRRYFCE YCGICRSKKS LITSHILTHH EEELDKARAE  60
EEDDATEGVK GSNTCEECGV TFKKPAYLKQ HMQSHSPEYQ VGRPPEKLHQ EGLNHATFLV  120
FVILSQRPYV CSVDDCHSSY RRKDHLTRHL LGHRGKLFKC PIENCKCEFS IQGNMKRHVK  180
EQHNGDNPST STESEKQYVC QEAGCGKAFR FASKLRKHED SHVKLDSVEA VCAEPGCMKI  240
FTNEQCLKEH IHSCHQHITC EVCGTKQLKK NLKRHLRTHE GKGPVESIKC MYKGCDRTFS  300
TKSNLNQHVK AAHLKQKPFV CSFSGCGARF SYKHVRDNHE NTGCHVYTHG DFEEADEQFR  360
SRPRGGRKRK YPTVEMLVRK RVSPPNQLDG SFGCFSNFLC QDEEQDEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	370	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-138	C2H2 family protein