PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON73757.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 305aa MW: 34447.5 Da PI: 9.0478

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON73757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.1	4e-15	235	260	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG+C+yGd C+FaHg PON73757.1 235 FKTELCNKWQETGECPYGDHCQFAHG 260 79***********************8 PP
2	zf-CCCH	18.5	3.5e-06	273	297	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykt Cr + G C+yG rC+F H PON73757.1 273 YKTQVCRMVLN-GvVCPYGHRCHFLH 297 78888888888.669*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MQKNLATMTS SSSISHGVVS SKSFFLDSDS PSTIAAAIDD HRRHLYHSIL VQDHQEMVNR 60 RSLCLNRLRQ VAAEAGDLRR ENSHLRSVNV ELNKQLRLLT QSTLRNHNRS PGSRSYTTGS 120 TRFGDRQEGS HGHERESQIG TGVNGIRAEN SAELLDMYSR LPKSISVKCD DYLELEAHGA 180 IVNNGGRSRD STRFRSSSLQ NVKQKMYVGG EGKKGTYHHG HEDPVELEVY KQGTFKTELC 240 NKWQETGECP YGDHCQFAHG IDELRPVIRH PRYKTQVCRM VLNGVVCPYG HRCHFLHALS 300 DHKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-59	C3H family protein