PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON75813.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 279aa    MW: 31676.7 Da    PI: 10.6304
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON75813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.6e-181151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i+n+s r+ tf kR++g++KK +ELS+LCd++++ ii+s+ 
  PON75813.1 11 ISNDSARKATFKKRKKGMMKKVSELSTLCDIDACAIIYSPY 51
                9**************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MTRKKVKLAY ISNDSARKAT FKKRKKGMMK KVSELSTLCD IDACAIIYSP YDTQPEVFPS  60
VAGVHRVLAK FRRMPEMEQS KKMVNQEGFL RQRIAKAGEQ LKKQRKENRE KEMTRVMFHN  120
LTGKMGLQGL SVIDLNDLTW MIDHHLKDIH KRMETIAKNK RSVRMAAAAD TGKQKRGGGE  180
SSHVAAAAMN VENSSNGMQR QQQWLMGLMN PHQQDHDKSN SSSNNNNNNN NNNNNNNNNN  240
NNNNNNNNNN SHGQHMGFGG DEMILPFGDN NNWSNGFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYISNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-63M-type_MADS family protein