PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON75825.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 514aa MW: 56831.4 Da PI: 7.4996

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON75825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl PON75825.1 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.7	3.1e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ PON75825.1 67 RGPFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPLS EVENDITKLD KASSMTNKAG NNNNNNENNN NIGSSSNDPH HHHQLNLTEA 180 QPSSIAVDHR YPLLEVSSCT NPKIMNHNLS AATPPPTQEF FLEKSDIVSN TTSGCRPSDL 240 ASYFSFHHSN NYGTSSSHDH HSNMASFCFN MSQNSSTTRH HHHHHHHHHD HHQMMNSLIP 300 PVSSCSIFSS SSSSTSTSSS SPSINPRVKP SISLPLSDHQ NPPTVSCEVN NNGVQNWEAS 360 TFSNNGSSST SSNIELQSQG NNNFFENSNT TPPPTATTTT TTTPNAANFS TWGGLVPESG 420 ALKSDHDPED IKWSEYLHSP FLLGASNNSQ NSAQPILYSN IVKPETHGHL VLTSTTGSTS 480 SSWHQSELVQ AASSEIMYTN KDLQRLAVAF GQTL

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPLS EVENDITKLD KASSMTNKAG NNNNNNENNN NIGSSSNDPH HHHQLNLTEA  180
QPSSIAVDHR YPLLEVSSCT NPKIMNHNLS AATPPPTQEF FLEKSDIVSN TTSGCRPSDL  240
ASYFSFHHSN NYGTSSSHDH HSNMASFCFN MSQNSSTTRH HHHHHHHHHD HHQMMNSLIP  300
PVSSCSIFSS SSSSTSTSSS SPSINPRVKP SISLPLSDHQ NPPTVSCEVN NNGVQNWEAS  360
TFSNNGSSST SSNIELQSQG NNNFFENSNT TPPPTATTTT TTTPNAANFS TWGGLVPESG  420
ALKSDHDPED IKWSEYLHSP FLLGASNNSQ NSAQPILYSN IVKPETHGHL VLTSTTGSTS  480
SSWHQSELVQ AASSEIMYTN KDLQRLAVAF GQTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	2e-88	MYB family protein