PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON76109.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 617aa MW: 68410.3 Da PI: 9.1736

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON76109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4e-07	524	573	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ PON76109.1 524 RRPFSVSEVEALVRAVEKLGTGRWRDVKFHAFdnaKHRTYVDLKDKWKTL 573 678999******************9999999************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MMDCGFNDYQ EPEVPRSCRS ARGRGPIKKR WEGNRKHSCE ILASVAGKLL EKSDNSLHTD 60 ASCGKNLHDA CDSVISKQEV DEGQFLNEEL LELGSSLEKA FGCNPGFQSF CDPDKFNSEI 120 NPMSKDFRWS GLLNSNKKKA FDDSNFVPDV IGGKVLGVPE RKVEAEPTEL INQSVKDKTI 180 TVTCGSEDLM KLEGKQPELV GPLCNIHTAS VRVVSRDDDE SSLGSAYPST MVKALGPPLD 240 TGNKRIKKIS DSSHWRVAPD VDGNYSSTDG KVKEVCCEER TGYTHENTQK IYPFKKRKFF 300 NQDFSTSNRG SNRDGAFDSS DKRINGKQVT AAIGGSSSMT GQHVSPNSKE CNVKLSIKSF 360 KVPELFIDIP MTATVGSLKR TVMDAVTSIL GEGLHVGILV QGKKVKDDNK TLVQTGISQY 420 NKHSNLGFIL EPKHSQTATS PFTKNESLLS RIKSQGLTRH SVSLGGSVEN DFNATPALGD 480 TLSNNTNNES KALIPVPRIS MEALAVVPFH RKSGHHEYLK RRIRRPFSVS EVEALVRAVE 540 KLGTGRWRDV KFHAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLAA 600 QAYWSYRQPK QEAKVTV

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MMDCGFNDYQ EPEVPRSCRS ARGRGPIKKR WEGNRKHSCE ILASVAGKLL EKSDNSLHTD  60
ASCGKNLHDA CDSVISKQEV DEGQFLNEEL LELGSSLEKA FGCNPGFQSF CDPDKFNSEI  120
NPMSKDFRWS GLLNSNKKKA FDDSNFVPDV IGGKVLGVPE RKVEAEPTEL INQSVKDKTI  180
TVTCGSEDLM KLEGKQPELV GPLCNIHTAS VRVVSRDDDE SSLGSAYPST MVKALGPPLD  240
TGNKRIKKIS DSSHWRVAPD VDGNYSSTDG KVKEVCCEER TGYTHENTQK IYPFKKRKFF  300
NQDFSTSNRG SNRDGAFDSS DKRINGKQVT AAIGGSSSMT GQHVSPNSKE CNVKLSIKSF  360
KVPELFIDIP MTATVGSLKR TVMDAVTSIL GEGLHVGILV QGKKVKDDNK TLVQTGISQY  420
NKHSNLGFIL EPKHSQTATS PFTKNESLLS RIKSQGLTRH SVSLGGSVEN DFNATPALGD  480
TLSNNTNNES KALIPVPRIS MEALAVVPFH RKSGHHEYLK RRIRRPFSVS EVEALVRAVE  540
KLGTGRWRDV KFHAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLAA  600
QAYWSYRQPK QEAKVTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	298	QKIYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-110	MYB_related family protein