PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON76943.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 343aa MW: 38915.5 Da PI: 7.9048

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON76943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	9.2e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g W+t + + ++R +k+c++rw++yl PON76943.1 14 RGAWTAMEDKILTEYIKIHGEGKWRTLPGRAALKRFGKSCRLRWLNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	51.4	2.5e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ PON76943.1 67 RGNITPDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRSTPCSKE GLNRGAWTAM EDKILTEYIK IHGEGKWRTL PGRAALKRFG KSCRLRWLNY 60 LKPGIKRGNI TPDEEDLIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NIRKKIEAHS 120 LKSNHTTSCK PSSNQPKFRQ LEPEPKTTQY SSTLVPQQPS YKIHNPTSSR VVRTKATRCT 180 KVVLLPQEPR NKVVLLAHDN EMNGSGHDDH QHFNTSKPPV DEVPSVVDYD HDQLVNVNCD 240 QSFSYVPDKS NSPSRFMNTD FGTDDQDDFL SQFLNIDSGF NHDVAEKIIS SSNSKASSCS 300 KADKENETFL FSHDMPFGLD LESATASLID QANDDMDWLQ RLT

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRSTPCSKE GLNRGAWTAM EDKILTEYIK IHGEGKWRTL PGRAALKRFG KSCRLRWLNY  60
LKPGIKRGNI TPDEEDLIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NIRKKIEAHS  120
LKSNHTTSCK PSSNQPKFRQ LEPEPKTTQY SSTLVPQQPS YKIHNPTSSR VVRTKATRCT  180
KVVLLPQEPR NKVVLLAHDN EMNGSGHDDH QHFNTSKPPV DEVPSVVDYD HDQLVNVNCD  240
QSFSYVPDKS NSPSRFMNTD FGTDDQDDFL SQFLNIDSGF NHDVAEKIIS SSNSKASSCS  300
KADKENETFL FSHDMPFGLD LESATASLID QANDDMDWLQ RLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	9e-63	MYB family protein