PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON77414.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SRS

Protein Properties

Length: 307aa MW: 33889.3 Da PI: 8.4336

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON77414.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	183	1.2e-56	13	188	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...........aeaaskrkrel.............. 78 t++CqdCGnqakk+C+++RCRtCCks+gf+C+thvkstWvp ++rr+rqqq++++++++ ++ +++ + PON77414.1 13 TSRCQDCGNQAKKECVYMRCRTCCKSKGFQCQTHVKSTWVPLYRRRHRQQQQQQQHHHHHHHLlttadsstihhHQD-------Qdqdhddyqggqyyf 104 679*******************************************99999988888777788765555442122.......122223334444432 PP DUF702 79 kskkqsalsstklssaeskkeletss..................lPeevsseavfrcvrvss......vddgeeelaYqtavsigGhvfkGiLydqGle 153 + ++l s+ s +P+ev+++a f+ vrv+s vd++++++aYqtavsigGhvfkGiLydqG e PON77414.1 105 N--------PKRLRSQL--------SinpnppsssagleetninFPPEVKTTATFHVVRVRStvnvdgVDQNHDQFAYQTAVSIGGHVFKGILYDQGQE 187 1........11111111........1122223334444456677********99987544433389999**********************98 PP DUF702 154 e 154 + PON77414.1 188 T 188 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MNMRQGGVNS GLTSRCQDCG NQAKKECVYM RCRTCCKSKG FQCQTHVKST WVPLYRRRHR 60 QQQQQQQHHH HHHHLLTTAD SSTIHHHQDQ DQDHDDYQGG QYYFNPKRLR SQLSINPNPP 120 SSSAGLEETN INFPPEVKTT ATFHVVRVRS TVNVDGVDQN HDQFAYQTAV SIGGHVFKGI 180 LYDQGQETSP TTTTSPSTTA TYGLAGAGDR TTSAGAGGLH HQLPIDYFVN VKSHHHHHHV 240 PAGLISTVGS SASASLTANN SSSVGADHDH HHHQPLILGS SSSSCPLLFT PNAFINPGMQ 300 FFPNRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	9e-36	SRS family protein