PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON78130.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 554aa MW: 60606.7 Da PI: 4.9448

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON78130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.9e-18	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede+l ++vk++G g+W+++ ++ g+ R++k+c++rw ++l PON78130.1 36 KGPWTSGEDEILMEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	48.1	2.6e-15	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ ++++++++G++ W++ a++++ gRt++++k++w++ PON78130.1 89 KGAFTADEERMIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MSRSTNESED ISKYHSESPL LDESNGGSSG GVVLKKGPWT SGEDEILMEY VKKHGEGNWN 60 AVQKHSGLSR CGKSCRLRWA NHLRPNLKKG AFTADEERMI IELHAKMGNK WARMAAHLPG 120 RTDNEIKNYW NTRIKRRQRA GLPLYPPDLC LQAFQENQQG LNTGGINCGD RGLHDPLQPN 180 SFEIPDVVFD GLKGNSDVLP YVSELPDISM STILMKGIAS PQYYSFMPPT IHRQKRIRES 240 SDVFPDSGGC VQNGCPLFDQ FQNDTCDKIS SFGPTFQHDL DPNKSLLSFA VTQGSHSLLN 300 GNSSASKPTY GSVKSELPSL QYPETDLGIW GTSPPPPLLK SVDAFIQSPP PVGAFESECS 360 SPRNSGLLDA LLHESKNLSS AKKLSSEKSS NSSSITPCVV ADNCNVNICE TDWEDYREPV 420 SPLGHSASSL FNECISASGS SLDEPQPVET FTGSTVKPEP VDADSIPDKE KEPKKPMDFI 480 RPDALLASDW FEQSSGCVKE GSIMTDTIVT LLGDDLATDY KHMATGSSSQ SQEWGLGYCA 540 WNNMPAVCQM SDLP

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MSRSTNESED ISKYHSESPL LDESNGGSSG GVVLKKGPWT SGEDEILMEY VKKHGEGNWN  60
AVQKHSGLSR CGKSCRLRWA NHLRPNLKKG AFTADEERMI IELHAKMGNK WARMAAHLPG  120
RTDNEIKNYW NTRIKRRQRA GLPLYPPDLC LQAFQENQQG LNTGGINCGD RGLHDPLQPN  180
SFEIPDVVFD GLKGNSDVLP YVSELPDISM STILMKGIAS PQYYSFMPPT IHRQKRIRES  240
SDVFPDSGGC VQNGCPLFDQ FQNDTCDKIS SFGPTFQHDL DPNKSLLSFA VTQGSHSLLN  300
GNSSASKPTY GSVKSELPSL QYPETDLGIW GTSPPPPLLK SVDAFIQSPP PVGAFESECS  360
SPRNSGLLDA LLHESKNLSS AKKLSSEKSS NSSSITPCVV ADNCNVNICE TDWEDYREPV  420
SPLGHSASSL FNECISASGS SLDEPQPVET FTGSTVKPEP VDADSIPDKE KEPKKPMDFI  480
RPDALLASDW FEQSSGCVKE GSIMTDTIVT LLGDDLATDY KHMATGSSSQ SQEWGLGYCA  540
WNNMPAVCQM SDLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-126	MYB family protein