PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON78214.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 748aa MW: 83110.9 Da PI: 5.8619

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON78214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.5e-08	128	150	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F Hgp PON78214.1 128 VPCIFFQK-GYCIKGDRCAFLHGP 150 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MVAGTQQQPQ QLQQLTQPPQ QHQLPVSAEE EALKRNTDCV YFLASPLTCK KGSECEYRHS 60 EYARVNPRDC WYWLNGNCLN PKCSFRHPPL DGLLGAQAAP SVGSGLPSSQ TAAASVPAAT 120 QNSGKQAVPC IFFQKGYCIK GDRCAFLHGP NPTTSIKITQ PSAPTHASEP SNVKKAFGGL 180 QKCTQEQRIP QANISKLVGV LPEANPAPKV ETAPPRNGVR IERSAQSIKA FDDESLKGNT 240 VNAPVINGNL TSRSSRSHVV NVSDDHSFQN GKDADEFLRE SSPGFDVLVD DELRDPEYLH 300 GKDQYGRGRG HDGRNLNSVD EYDMDKSADY GSVADIDREH FRDPRGYESY DHMQGQHAWD 360 QHRASSERMV VGPAHFDRRG YRKSHSPENV SELDLRHQLS KQRRVNGLRS VISLDYAVNN 420 HVDDRNYRVS SRRDSHQISQ HEGPLSGRLR GRIKLPGGAS SVNGGDLPLD REFDRGRNRG 480 RLSPSRPQIS THQGRFRDRL KGKAQEDYSN QERNFRVLRT RKDVMDDDSV EFAAPKPLSE 540 LKLGRVTENK EQSHSHLGKR KNTRLEVSQQ SEDDLSFEGP KSLSEILKRK RGAESAAFGS 600 GKSGHEEDNN QRENRESIQG DSKTTALRDM RHGRSTVSKQ GNVSSSKGES KSATAEEVGI 660 EGNKIEGSLA PSEAPNMNDL EVEDGMIYDE TGDDQELEAE DQAHGEYDYE QGEEEGEYGG 720 ENAEAEDEYL EDEDGDDDFA KKIGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MVAGTQQQPQ QLQQLTQPPQ QHQLPVSAEE EALKRNTDCV YFLASPLTCK KGSECEYRHS  60
EYARVNPRDC WYWLNGNCLN PKCSFRHPPL DGLLGAQAAP SVGSGLPSSQ TAAASVPAAT  120
QNSGKQAVPC IFFQKGYCIK GDRCAFLHGP NPTTSIKITQ PSAPTHASEP SNVKKAFGGL  180
QKCTQEQRIP QANISKLVGV LPEANPAPKV ETAPPRNGVR IERSAQSIKA FDDESLKGNT  240
VNAPVINGNL TSRSSRSHVV NVSDDHSFQN GKDADEFLRE SSPGFDVLVD DELRDPEYLH  300
GKDQYGRGRG HDGRNLNSVD EYDMDKSADY GSVADIDREH FRDPRGYESY DHMQGQHAWD  360
QHRASSERMV VGPAHFDRRG YRKSHSPENV SELDLRHQLS KQRRVNGLRS VISLDYAVNN  420
HVDDRNYRVS SRRDSHQISQ HEGPLSGRLR GRIKLPGGAS SVNGGDLPLD REFDRGRNRG  480
RLSPSRPQIS THQGRFRDRL KGKAQEDYSN QERNFRVLRT RKDVMDDDSV EFAAPKPLSE  540
LKLGRVTENK EQSHSHLGKR KNTRLEVSQQ SEDDLSFEGP KSLSEILKRK RGAESAAFGS  600
GKSGHEEDNN QRENRESIQG DSKTTALRDM RHGRSTVSKQ GNVSSSKGES KSATAEEVGI  660
EGNKIEGSLA PSEAPNMNDL EVEDGMIYDE TGDDQELEAE DQAHGEYDYE QGEEEGEYGG  720
ENAEAEDEYL EDEDGDDDFA KKIGVMFS