PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON78415.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family C3H
Protein Properties Length: 340aa    MW: 38341.1 Da    PI: 7.0332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON78415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.8e-0987111126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC  f   G C+ G++C+FaHg
  PON78415.1  87 FKTRLCAKFKM-GLCRNGENCNFAHG 111
                 69*********.*************8 PP
2zf-CCCH28.42.8e-09150172325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 ++lC+ f+ + +C+yGdrC+F H
  PON78415.1 150 MKLCKKFYNGEECPYGDRCNFLH 172
                 689******66************ PP
3zf-CCCH42.51.1e-13232257126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ + +tG+C++G++C+FaHg
  PON78415.1 232 WKTKLCNKWEQTGHCPFGEKCHFAHG 257
                 8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MSFPDSRSPF MQSVPSYGTG TDAISCWPQF PMNNEDQQFD FEQQPPPFKR ARNSEESQSN  60
SSPYPPMNTR MIPPNAPINK GISNIFFKTR LCAKFKMGLC RNGENCNFAH GIEDMRQPPP  120
NWQELVGLRD NEDRSSSGNW EDDQKIIHRM KLCKKFYNGE ECPYGDRCNF LHEDPAKYRD  180
DLGRFRESSA ISIGTTPPPV INGNVPGNSE DSRVVNSVSD PSRVNMMKPV YWKTKLCNKW  240
EQTGHCPFGE KCHFAHGNAE LQASSGRVEV EALNIALQTK PQGAAIDSLP SATSVAAFDE  300
DVQGKKCVLK WKGLKKINRI YGDWLDDLPL VQNLPSRVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-88C3H family protein