PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON78605.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family LBD
Protein Properties Length: 244aa    MW: 26675.2 Da    PI: 8.0766
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON78605.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927.1e-2941081100
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +l+l++a p+  r+++++sl+yeA+ r+ +P++G+vg+++++++  +q+++e+
  PON78605.1   4 SCNGCRVLRKGCSDDCAIRPCLqwiksPDSQAQATLFLAKFYGRTGLLNLINAGPRYLRPAVFKSLLYEACGRIVNPINGSVGLLWAGEWAKCQAAVEA 102
                 6*************************************************************************************************9 PP

      DUF260  95 allkee 100
                 +l++++
  PON78605.1 103 VLAGAP 108
                 998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MRTSCNGCRV LRKGCSDDCA IRPCLQWIKS PDSQAQATLF LAKFYGRTGL LNLINAGPRY  60
LRPAVFKSLL YEACGRIVNP INGSVGLLWA GEWAKCQAAV EAVLAGAPIK VESDEHAPHS  120
KLPIKSSWVD IRHVTKDDVV PNSDPSHHHQ VRTRNRFKRT AAGHKTLIGG SDMGSLTQFL  180
NPDHEYWWPR LLGNGSSTSA GEDLESMFSV ESVEASLAQQ AKPESSPADD TRGEVRLELT  240
LGLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-70LBD family protein